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Building sphinx docs was generating warnings for several locations about
sphinx being unable to reference certain classes.
This was found to be due to the `automodule` definitions for each
section including the `:noindex:` setting. Removing this configuration
resolved the vast majority of cross-referencing warnings that sphinx
would report on during a build of the docs.
Note that a single warning will remain, referencing threading.Thread,
after this change.
Closes: #2917
Signed-off-by: Jake Hunsaker <jhunsake@redhat.com>
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