// Package dag contains the base common code to define an entity stored
// in a chain of git objects, supporting actions like Push, Pull and Merge.
package dag
import (
"encoding/json"
"fmt"
"sort"
"github.com/pkg/errors"
"github.com/MichaelMure/git-bug/entities/identity"
"github.com/MichaelMure/git-bug/entity"
"github.com/MichaelMure/git-bug/repository"
"github.com/MichaelMure/git-bug/util/lamport"
)
const refsPattern = "refs/%s/%s"
const creationClockPattern = "%s-create"
const editClockPattern = "%s-edit"
type OperationUnmarshaler func(raw json.RawMessage, resolver entity.Resolvers) (Operation, error)
// Definition hold the details defining one specialization of an Entity.
type Definition struct {
// the name of the entity (bug, pull-request, ...), for human consumption
Typename string
// the Namespace in git references (bugs, prs, ...)
Namespace string
// a function decoding a JSON message into an Operation
OperationUnmarshaler OperationUnmarshaler
// the expected format version number, that can be used for data migration/upgrade
FormatVersion uint
}
// Entity is a data structure stored in a chain of git objects, supporting actions like Push, Pull and Merge.
type Entity struct {
// A Lamport clock is a logical clock that allow to order event
// inside a distributed system.
// It must be the first field in this struct due to https://github.com/golang/go/issues/36606
createTime lamport.Time
editTime lamport.Time
Definition
// operations that are already stored in the repository
ops []Operation
// operations not yet stored in the repository
staging []Operation
lastCommit repository.Hash
}
// New create an empty Entity
func New(definition Definition) *Entity {
return &Entity{
Definition: definition,
}
}
// Read will read and decode a stored local Entity from a repository
func Read(def Definition, repo repository.ClockedRepo, resolvers entity.Resolvers, id entity.Id) (*Entity, error) {
if err := id.Validate(); err != nil {
return nil, errors.Wrap(err, "invalid id")
}
ref := fmt.Sprintf("refs/%s/%s", def.Namespace, id.String())
return read(def, repo, resolvers, ref)
}
// readRemote will read and decode a stored remote Entity from a repository
func readRemote(def Definition, repo repository.ClockedRepo, resolvers entity.Resolvers, remote string, id entity.Id) (*Entity, error) {
if err := id.Validate(); err != nil {
return nil, errors.Wrap(err, "invalid id")
}
ref := fmt.Sprintf("refs/remotes/%s/%s/%s", def.Namespace, remote, id.String())
return read(def, repo, resolvers, ref)
}
// read fetch from git and decode an Entity at an arbitrary git reference.
func read(def Definition, repo repository.ClockedRepo, resolvers entity.Resolvers, ref string) (*Entity, error) {
rootHash, err := repo.ResolveRef(ref)
if err != nil {
return nil, err
}
// Perform a breadth-first search to get a topological order of the DAG where we discover the
// parents commit and go back in time up to the chronological root
queue := make([]repository.Hash, 0, 32)
visited := make(map[repository.Hash]struct{})
BFSOrder := make([]repository.Commit, 0, 32)
queue = append(queue, rootHash)
visited[rootHash] = struct{}{}
for len(queue) > 0 {
// pop
hash := queue[0]
queue = queue[1:]
commit, err := repo.ReadCommit(hash)
if err != nil {
return nil, err
}
BFSOrder = append(BFSOrder, commit)
for _, parent := range commit.Parents {
if _, ok := visited[parent]; !ok {
queue = append(queue, parent)
// mark as visited
visited[parent] = struct{}{}
}
}
}
// Now, we can reverse this topological order and read the commits in an order where
// we are sure to have read all the chronological ancestors when we read a commit.
// Next step is to:
// 1) read the operationPacks
// 2) make sure that clocks causality respect the DAG topology.
oppMap := make(map[repository.Hash]*operationPack)
var opsCount int
for i := len(BFSOrder) - 1; i >= 0; i-- {
commit := BFSOrder[i]
isFirstCommit := i == len(BFSOrder)-1
isMerge := len(commit.Parents) > 1
// Verify DAG structure: single chronological root, so only the root
// can have no parents. Said otherwise, the DAG need to have exactly
// one leaf.
if !isFirstCommit && len(commit.Parents) == 0 {
return nil, fmt.Errorf("multiple leafs in the entity DAG")
}
opp, err := readOperationPack(def, repo, resolvers, commit)
if err != nil {
return nil, err
}
err = opp.Validate()
if err != nil {
return nil, err
}
if isMerge && len(opp.Operations) > 0 {
return nil, fmt.Errorf("merge commit cannot have operations")
}
// Check that the create lamport clock is set (not checked in Validate() as it's optional)
if isFirstCommit && opp.CreateTime <= 0 {
return nil, fmt.Errorf("creation lamport time not set")
}
// make sure that the lamport clocks causality match the DAG topology
for _, parentHash := range commit.Parents {
parentPack, ok := oppMap[parentHash]
if !ok {
panic("DFS failed")
}
if parentPack.EditTime >= opp.EditTime {
return nil, fmt.Errorf("lamport clock ordering doesn't match the DAG")
}
// to avoid an attack where clocks are pushed toward the uint64 rollover, make sure
// that the clocks don't jump too far in the future
// we ignore merge commits here to allow merging after a loooong time without breaking anything,
// as long as there is one valid chain of small hops, it's fine.
if !isMerge && opp.EditTime-parentPack.EditTime > 1_000_000 {
return nil, fmt.Errorf("lamport clock jumping too far in the future, likely an attack")
}
}
oppMap[commit.Hash] = opp
opsCount += len(opp.Operations)
}
// The clocks are fine, we witness them
for _, opp := range oppMap {
err = repo.Witness(fmt.Sprintf(creationClockPattern, def.Namespace), opp.CreateTime)
if err != nil {
return nil, err
}
err = repo.Witness(fmt.Sprintf(editClockPattern, def.Namespace), opp.EditTime)
if err != nil {
return nil, err
}
}
// Now that we know that the topological order and clocks are fine, we order the operationPacks
// based on the logical clocks, entirely ignoring the DAG topology
oppSlice := make([]*operationPack, 0, len(oppMap))
for _, pack := range oppMap {
oppSlice = append(oppSlice, pack)
}
sort.Slice(oppSlice, func(i, j int) bool {
// Primary ordering with the EditTime.
if oppSlice[i].EditTime != oppSlice[j].EditTime {
return oppSlice[i].EditTime < oppSlice[j].EditTime
}
// We have equal EditTime, which means we have concurrent edition over different machines, and we
// can't tell which one came first. So, what now? We still need a total ordering and the most stable possible.
// As a secondary ordering, we can order based on a hash of the serialized Operations in the
// operationPack. It doesn't carry much meaning but it's unbiased and hard to abuse.
// This is a lexicographic ordering on the stringified ID.
return oppSlice[i].Id() < oppSlice[j].Id()
})
// Now that we ordered the operationPacks, we have the order of the Operations
ops := make([]Operation, 0, opsCount)
var createTime lamport.Time
var editTime lamport.Time
for _, pack := range oppSlice {
for _, operation := range pack.Operations {
ops = append(ops, operation)
}
if pack.CreateTime > createTime {
createTime = pack.CreateTime
}
if pack.EditTime > editTime {
editTime = pack.EditTime
}
}
return &Entity{
Definition: def,
ops: ops,
lastCommit: rootHash,
createTime: createTime,
editTime: editTime,
}, nil
}
// readClockNoCheck fetch from git, read and witness the clocks of an Entity at an arbitrary git reference.
// Note: readClockNoCheck does not verify the integrity of the Entity and could witness incorrect or incomplete
// clocks if so. If data integrity check is a requirement, a flow similar to read without actually reading/decoding
// operation blobs can be implemented instead.
func readClockNoCheck(def Definition, repo repository.ClockedRepo, ref string) error {
rootHash, err := repo.ResolveRef(ref)
if err != nil {
return err
}
commit, err := repo.ReadCommit(rootHash)
if err != nil {
return err
}
createTime, editTime, err := readOperationPackClock(repo, commit)
if err != nil {
return err
}
// if we have more than one commit, we need to find the root to have the create time
if len(commit.Parents) > 0 {
for len(commit.Parents) > 0 {
// The path to the root is irrelevant.
commit, err = repo.ReadCommit(commit.Parents[0])
if err != nil {
return err
}
}
createTime, _, err = readOperationPackClock(repo, commit)
if err != nil {
return err
}
}
if createTime <= 0 {
return fmt.Errorf("creation lamport time not set")
}
if editTime <= 0 {
return fmt.Errorf("creation lamport time not set")
}
err = repo.Witness(fmt.Sprintf(creationClockPattern, def.Namespace), createTime)
if err != nil {
return err
}
err = repo.Witness(fmt.Sprintf(editClockPattern, def.Namespace), editTime)
if err != nil {
return err
}
return nil
}
type StreamedEntity struct {
Entity *Entity
Err error
}
// ReadAll read and parse all local Entity
func ReadAll(def Definition, repo repository.ClockedRepo, resolvers entity.Resolvers) <-chan StreamedEntity {
out := make(chan StreamedEntity)
go func() {
defer close(out)
refPrefix := fmt.Sprintf("refs/%s/", def.Namespace)
refs, err := repo.ListRefs(refPrefix)
if err != nil {
out <- StreamedEntity{Err: err}
return
}
for _, ref := range refs {
e, err := read(def, repo, resolvers, ref)
if err != nil {
out <- StreamedEntity{Err: err}
return
}
out <- StreamedEntity{Entity: e}
}
}()
return out
}
// ReadAllClocksNoCheck goes over all entities matching Definition and read/witness the corresponding clocks so that the
// repo end up with correct clocks for the next write.
func ReadAllClocksNoCheck(def Definition, repo repository.ClockedRepo) error {
refPrefix := fmt.Sprintf("refs/%s/", def.Namespace)
refs, err := repo.ListRefs(refPrefix)
if err != nil {
return err
}
for _, ref := range refs {
err = readClockNoCheck(def, repo, ref)
if err != nil {
return err
}
}
return nil
}
// Id return the Entity identifier
func (e *Entity) Id() entity.Id {
// id is the id of the first operation
return e.FirstOp().Id()
}
// Validate check if the Entity data is valid
func (e *Entity) Validate() error {
// non-empty
if len(e.ops) == 0 && len(e.staging) == 0 {
return fmt.Errorf("entity has no operations")
}
// check if each operations are valid
for _, op := range e.ops {
if err := op.Validate(); err != nil {
return err
}
}
// check if staging is valid if needed
for _, op := range e.staging {
if err := op.Validate(); err != nil {
return err
}
}
// Check that there is no colliding operation's ID
ids := make(map[entity.Id]struct{})
for _, op := range e.Operations() {
if _, ok := ids[op.Id()]; ok {
return fmt.Errorf("id collision: %s", op.Id())
}
ids[op.Id()] = struct{}{}
}
return nil
}
// Operations return the ordered operations
func (e *Entity) Operations() []Operation {
return append(e.ops, e.staging...)
}
// FirstOp lookup for the very first operation of the Entity
func (e *Entity) FirstOp() Operation {
for _, op := range e.ops {
return op
}
for _, op := range e.staging {
return op
}
return nil
}
// LastOp lookup for the very last operation of the Entity
func (e *Entity) LastOp() Operation {
if len(e.staging) > 0 {
return e.staging[len(e.staging)-1]
}
if len(e.ops) > 0 {
return e.ops[len(e.ops)-1]
}
return nil
}
// Append add a new Operation to the Entity
func (e *Entity) Append(op Operation) {
e.staging = append(e.staging, op)
}
// NeedCommit indicate if the in-memory state changed and need to be commit in the repository
func (e *Entity) NeedCommit() bool {
return len(e.staging) > 0
}
// CommitAsNeeded execute a Commit only if necessary. This function is useful to avoid getting an error if the Entity
// is already in sync with the repository.
func (e *Entity) CommitAsNeeded(repo repository.ClockedRepo) error {
if e.NeedCommit() {
return e.Commit(repo)
}
return nil
}
// Commit write the appended operations in the repository
func (e *Entity) Commit(repo repository.ClockedRepo) error {
if !e.NeedCommit() {
return fmt.Errorf("can't commit an entity with no pending operation")
}
err := e.Validate()
if err != nil {
return errors.Wrapf(err, "can't commit a %s with invalid data", e.Definition.Typename)
}
for len(e.staging) > 0 {
var author identity.Interface
var toCommit []Operation
// Split into chunks with the same author
for len(e.staging) > 0 {
op := e.staging[0]
if author != nil && op.Author().Id() != author.Id() {
break
}
author = e.staging[0].Author()
toCommit = append(toCommit, op)
e.staging = e.staging[1:]
}
e.editTime, err = repo.Increment(fmt.Sprintf(editClockPattern, e.Namespace))
if err != nil {
return err
}
opp := &operationPack{
Author: author,
Operations: toCommit,
EditTime: e.editTime,
}
if e.lastCommit == "" {
e.createTime, err = repo.Increment(fmt.Sprintf(creationClockPattern, e.Namespace))
if err != nil {
return err
}
opp.CreateTime = e.createTime
}
var parentCommit []repository.Hash
if e.lastCommit != "" {
parentCommit = []repository.Hash{e.lastCommit}
}
commitHash, err := opp.Write(e.Definition, repo, parentCommit...)
if err != nil {
return err
}
e.lastCommit = commitHash
e.ops = append(e.ops, toCommit...)
}
// not strictly necessary but make equality testing easier in tests
e.staging = nil
// Create or update the Git reference for this entity
// When pushing later, the remote will ensure that this ref update
// is fast-forward, that is no data has been overwritten.
ref := fmt.Sprintf(refsPattern, e.Namespace, e.Id().String())
return repo.UpdateRef(ref, e.lastCommit)
}
// CreateLamportTime return the Lamport time of creation
func (e *Entity) CreateLamportTime() lamport.Time {
return e.createTime
}
// EditLamportTime return the Lamport time of the last edition
func (e *Entity) EditLamportTime() lamport.Time {
return e.editTime
}
